Research output per year
Research output per year
Personal profile
Title of docent
Signal Processing for Systems and Molecular Biology. TUT-BMT tiedekunta. 2017 - 2017.
Signaalinkäsittely. Signaalinkäsittelyn laitos. 2012 - 2017.
Signaalinkäsittely. Signaalinkäsittelyn laitos. 2012 - 2017.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Doctor of Science (Technology), Universidade Tecnica de Lisboa
Award Date: 29 Jul 2004
Fingerprint
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Bimodality in E. coli gene expression: Sources and robustness to genome-wide stresses
Baptista, I. S. C., Dash, S., Arsh, A. M., Kandavalli, V., Scandolo, C. M., Sanders, B. C. & Ribeiro, A. S., Feb 2025, In: PLoS Computational Biology. 21, 2, 23 p., e1012817.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Downloads (Pure) -
Dynamics of bacterial operons during genome-wide stresses is influenced by premature terminations and internal promoters
Jagadeesan, R., Dash, S., Palma, C. S. D., Baptista, I. S. C., Chauhan, V., Mäkelä, J. & Ribeiro, A. S., 16 May 2025, In: Science Advances. 11, 20, 16 p., eadl3570.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Downloads (Pure) -
A library of reporters of the global regulators of gene expression in Escherichia coli
Dash, S., Jagadeesan, R., Baptista, I. S. C., Chauhan, V., Kandavalli, V., Oliveira, S. M. D. & Ribeiro, A. S., Jun 2024, In: mSystems. 9, 6Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)11 Downloads (Pure) -
Transcription Attenuation in Synthetic Promoters in Nonoverlapping Tandem Formation
Chauhan, V., Baptista, I. S. C., Arsh, A. M., Jagadeesan, R., Dash, S. & Ribeiro, A. S., Aug 2024, In: Biochemistry. 63, p. 2009-2022Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)10 Downloads (Pure) -
Surface modification of silicate, borosilicate, and phosphate bioactive glasses to improve/control protein adsorption: PART II
Gobbo, V. A., Turkki, P., Santos Dias Palma, C., Parihar, V. S., Vernè, E., Spriano, S., Sanches Ribeiro, A., Hytönen, V. P. & Massera, J., 2023, In: Ceramics International. 49, 8, p. 12856-12865Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile4 Citations (Scopus)23 Downloads (Pure)
Datasets
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Data for: Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry
Mohamed Bahrudeen, M. (Creator), Chauhan, V. (Creator), Santos Dias Palma, C. (Creator), Oliveira, S. M. D. (Creator), Kandavalli, V. K. (Creator) & Sanches Ribeiro, A. (Creator), Mendeley Data, 25 Oct 2019
Dataset
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Production interval measurements from Transcription closed and open complex formation coordinate expression of genes with a shared promoter region
Häkkinen, A. (Creator), Oliveira, S. M. D. (Creator), Neeli-Venkata, R. (Contributor) & Sanches Ribeiro, A. (Creator), The Royal Society, 25 Nov 2019
DOI: 10.6084/m9.figshare.11108891.v1, https://doi.org/10.6084/m9.figshare.c.4757471.v1
Dataset
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Transcription attenuation in synthetic promoters in nonoverlapping tandem formation
Chauhan, V. (Creator), Arsh, A. (Creator), Jagadeesan, R. (Creator), Ribeiro, A. S. (Creator), Calado Baptista, I. (Creator) & Dash, S. (Creator), Dryad, 25 Aug 2024
Dataset
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Supplementary data for "Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements"
Oliveira, S. M. D. (Creator), Häkkinen, A. E. (Creator), Lloyd-Price, J. R. (Creator), Tran, H. (Creator), Kandavalli, V. (Creator) & Sanches Ribeiro, A. (Creator), figshare, 2016
DOI: 10.1371/journal.pcbi.1005174#sec012, https://figshare.com/articles/1/4128594
Dataset
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RNA number measurements from Transcription closed and open complex formation coordinate expression of genes with a shared promoter region
Häkkinen, A. (Creator), Oliveira, S. M. D. (Creator), Neeli-Venkata, R. (Contributor) & Sanches Ribeiro, A. (Creator), figshare, 25 Nov 2019
DOI: 10.6084/m9.figshare.11108888.v1
Dataset
Prizes
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B. Almeida, V. Chauhan, A.S. Ribeiro (2018) Studying Z-ring formation following nucleoid partitioning in Escherichia coli by microscopy, flow-cytometry and machine learning. 6th Global Summit on Artificial Intelligence and Neural Networks, Oct. 15-16, Helsinki, Finland.
Sanches Ribeiro, A. (Recipient) & Lima de Brito Almeida, B. (Recipient), 2018
Prize: Award or honor granted for a specific work
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Best Paper Award at BIOTECHNO2016
Sanches Ribeiro, A. (Recipient) & Matos da Costa, S. (Recipient), 26 Jun 2016
Prize: Award or honor granted for a specific work
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C.S.D. Palma, M.N.M. Bahrudeen, V. Chauhan, I. Baptista, S. Dash, B. Almeida and A.S. Ribeiro (2020) Regulatory mechanisms of the dynamics of closely spaced promoters in E. coli. The 1st International BioDesign Research Conference (IBDRC2020), 1-18 Dec., Virtual. DOI: 10.12236/ibdrc2020-a-0045.
Sanches Ribeiro, A. (Recipient) & Santos Dias Palma, C. (Recipient), 2020
Prize: Award or honor granted for a specific work
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Honorable mention in the competition for best publication of the year of the Faculty of Medicine and Health Technology of Tampere University, 2022.
Dash, S. (Recipient), Santos Dias Palma, C. (Recipient), Calado Baptista, I. (Recipient), Lima de Brito Almeida, B. (Recipient), Mohamed Bahrudeen, M. (Recipient), Chauhan, V. (Recipient), Jagadeesan, R. (Recipient) & Sanches Ribeiro, A. (Recipient), 25 Nov 2022
Prize: Award or honor granted for a specific work
Activities
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Effects of the nucleoid's structural plasticity on the robustness of retention of unwanted protein aggregates at the cell poles in Escherichia coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Effects of stress on the in vivo dynamics of non-stress-responsive genes in Escherichia coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Analysis of the Robustness of a Single copy Repressilator
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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The 11th International Workshop on Computational Systems Biology, WSCB 2014, May 15-16, Lisbon, Portugal
Sanches Ribeiro, A. (Chair)
2014Activity: Participating in or organising an event › Chair of workshop, panel, session or tutorial
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In Vivo Retention of Protein Aggregates in Escherichia Coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation