Andre Sanches Ribeiro

Professor, BioMediTech

Research activity per year

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Personal profile

Title of docent at TUT

Signal Processing for Systems and Molecular Biology. TUT-BMT tiedekunta. 2017 - 2017.
Signaalinkäsittely. Signaalinkäsittelyn laitos. 2012 - 2017.

Education/Academic qualification

Doctor of Science (Technology), Universidade Tecnica de Lisboa

Award Date: 29 Jul 2004

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95 Article
38 Conference contribution
19 Paper, poster or abstract
10 Chapter
More
- 2 Review Article
- 1 Anthology

Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup
Palma, C. S. D., Kandavalli, V., Bahrudeen, M. N. M., Minoia, M., Chauhan, V., Dash, S., Ribeiro, A. S., Mohamed Bahrudeen, M., Santos Dias Palma, C. & Vatsala, C., 2020, In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1863, 5, 13 p., 194515.
Research output: Contribution to journal › Article › Scientific › peer-review
Efficiency and Robustness of Processes Driven by Nucleoid Exclusion in Escherichia coli
Baptista, I., Chauhan, V., Almeida, B., Kandavalli, V. & Ribeiro, A. S., 2020, Physical Microbiology. Duménil, G. & van Teeffelen, S. (eds.). Springer, p. 59-80 22 p. (Advances in Experimental Medicine and Biology; vol. 1267).
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific › peer-review
Promoters proximity as a regulatory mechanism in single cell protein numbers statistics
Chauhan, V., Mohamed Bahrudeen, M., Lima de Brito Almeida, B. & Sanches Ribeiro, A., 19 Nov 2020.
Research output: Other conference contribution › Paper, poster or abstract › Scientific
Regulatory mechanisms of the dynamics of closely spaced promoters in E. coli
Santos Dias Palma, C., Mohamed Bahrudeen, M., Chauhan, V., Calado Baptista, I., Dash, S., Lima de Brito Almeida, B. & Sanches Ribeiro, A., 2020. 6 p.
Research output: Other conference contribution › Paper, poster or abstract › Scientific

Open Access
Single cell, over-time protein numbers of cold shock repressed genes in Escherichia coli
Dash, S., Santos Dias Palma, C., Calado Baptista, I. & Sanches Ribeiro, A., 16 Nov 2020.
Research output: Other conference contribution › Paper, poster or abstract › Scientific

Open Access

Supplementary data for "In Vivo Transcription Kinetics of a Synthetic Gene Uninvolved in Stress-Response Pathways in Stressed Escherichia coli Cells"
Muthukrishnan, A. B. (Creator), Martikainen, A. (Creator), Neeli Venkata, R. (Creator) & Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017
https://figshare.com/articles/In_Vivo_Transcription/1187355
Dataset
Supplementary data for "In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps"
Kandhavelu, M. (Creator), Mannerström, H. O. W. (Creator), Gupta, A. (Creator), Häkkinen, A. E. (Creator), Lloyd-Price, J. R. (Creator), Yli-Harja, O. (Creator) & Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017
https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-5-149#Declarations
Dataset
Supplementary data for "Information propagation within the Genetic Network of Saccharomyces cerevisiae"
Chowdhury, S. M. H. (Creator), Lloyd-Price, J. R. (Creator), Smolander, O. A. (Creator), Baici, W. C. V. (Creator), Hughes, T. R. (Creator), Yli-Harja, O. (Creator), Chua, G. (Creator) & Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017
https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-4-143#Declarations
Dataset
Supplementary data for "Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements"
Oliveira, S. M. D. (Creator), Häkkinen, A. E. (Creator), Lloyd-Price, J. R. (Creator), Tran, H. (Creator), Kandavalli, V. (Creator) & Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2016
DOI: 10.1371/journal.pcbi.1005174#sec012, https://figshare.com/articles/1/4128594
Dataset

B. Almeida, V. Chauhan, A.S. Ribeiro (2018) Studying Z-ring formation following nucleoid partitioning in Escherichia coli by microscopy, flow-cytometry and machine learning. 6th Global Summit on Artificial Intelligence and Neural Networks, Oct. 15-16, Helsinki, Finland.
Sanches Ribeiro, Andre (Recipient) & Lima de Brito Almeida, Bilena (Recipient), 2018
Prize: Award or honor granted for a specific work
Best Paper Award at BIOTECHNO2016
Sanches Ribeiro, Andre (Recipient) & Matos da Costa, S. (Recipient), 26 Jun 2016
Prize: Award or honor granted for a specific work
C.S.D. Palma, M.N.M. Bahrudeen, V. Chauhan, I. Baptista, S. Dash, B. Almeida and A.S. Ribeiro (2020) Regulatory mechanisms of the dynamics of closely spaced promoters in E. coli. The 1st International BioDesign Research Conference (IBDRC2020), 1-18 Dec., Virtual. DOI: 10.12236/ibdrc2020-a-0045.
Sanches Ribeiro, Andre (Recipient) & Santos Dias Palma, Cristina (Recipient), 2020
Prize: Award or honor granted for a specific work

28 Conference presentation
4 Reviewer of Scientific Journal
2 Membership of a scientific or program committee of a conference or seminar
1 Chair of workshop, panel, session or tutorial
More

Effects of stress on the in vivo dynamics of non-stress-responsive genes in Escherichia coli
Andre Sanches Ribeiro (Speaker)
2014
Activity: Talk or presentation › Conference presentation
The 11th International Workshop on Computational Systems Biology, WSCB 2014, May 15-16, Lisbon, Portugal
Andre Sanches Ribeiro (Chair)
2014
Activity: Participating in or organising an event › Chair of workshop, panel, session or tutorial
In Vivo Retention of Protein Aggregates in Escherichia Coli
Andre Sanches Ribeiro (Speaker)
2014
Activity: Talk or presentation › Conference presentation
Generator of Synthetic Time-lapsed, Phase-Contrast Microscopy Images of Growing E. Coli Cell Populations
Andre Sanches Ribeiro (Speaker)
2014
Activity: Talk or presentation › Conference presentation
Image Aligment and Lineage Construction Tool to Study Segregation and Partitioning in Division of Unwanted Protein Aggregates in Escherchia Coli
Andre Sanches Ribeiro (Speaker)
2014
Activity: Talk or presentation › Conference presentation