Research output per year
Research output per year
Personal profile
Title of docent
Signal Processing for Systems and Molecular Biology. TUT-BMT tiedekunta. 2017 - 2017.
Signaalinkäsittely. Signaalinkäsittelyn laitos. 2012 - 2017.
Signaalinkäsittely. Signaalinkäsittelyn laitos. 2012 - 2017.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Doctor of Science (Technology), Universidade Tecnica de Lisboa
Award Date: 29 Jul 2004
Fingerprint
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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A library of reporters of the global regulators of gene expression in Escherichia coli
Dash, S., Jagadeesan, R., Baptista, I. S. C., Chauhan, V., Kandavalli, V., Oliveira, S. M. D. & Ribeiro, A. S., Jun 2024, In: mSystems. 9, 6Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile4 Downloads (Pure) -
Transcription Attenuation in Synthetic Promoters in Nonoverlapping Tandem Formation
Chauhan, V., Baptista, I. S. C., Arsh, A. M., Jagadeesan, R., Dash, S. & Ribeiro, A. S., Aug 2024, In: Biochemistry. 63, p. 2009-2022Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Downloads (Pure) -
Surface modification of silicate, borosilicate, and phosphate bioactive glasses to improve/control protein adsorption: PART II
Gobbo, V. A., Turkki, P., Santos Dias Palma, C., Parihar, V. S., Vernè, E., Spriano, S., Sanches Ribeiro, A., Hytönen, V. P. & Massera, J., 2023, In: Ceramics International. 49, 8, p. 12856-12865Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Citations (Scopus)19 Downloads (Pure) -
Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli
Dash, S., Palma, C. S. D., Baptista, I. S. C., Almeida, B. L. B., Bahrudeen, M. N. M., Chauhan, V., Jagadeesan, R. & Ribeiro, A., Aug 2022, In: Nucleic Acids Research. 50, 15, p. 8512–8528 17 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)2 Downloads (Pure) -
Analytical kinetic model of native tandem promoters in E. coli
Chauhan, V., Bahrudeen, M. N. M., Palma, C. S. D., Baptista, I. S. C., Almeida, B. L. B., Dash, S., Kandavalli, V. & Ribeiro, A. S., 31 Jan 2022, In: PLoS Computational Biology. 18, 1, 23 p., e1009824.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile7 Citations (Scopus)25 Downloads (Pure)
Datasets
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Analytical kinetic model of native tandem promoters in E. coli
Chauhan, V. (Creator), Bahrudeen, M. N. M. (Creator), S.D. Palma, C. (Creator), S.C. Baptista, I. (Creator), L.B. Almeida, B. (Creator), Dash, S. (Creator), Kandavalli, V. (Creator) & S. Ribeiro, A. (Creator), Dryad, 1 Mar 2022
DOI: 10.5061/dryad.bnzs7h4bs, https://zenodo.org/record/5963450
Dataset
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Sequence-dependent model of genes with dual σ factor preference
Calado Baptista, I. (Creator), Kandavalli, V. (Creator), Chauhan, V. (Creator), Mohamed Bahrudeen, M. N. (Creator), Lima de Brito Almeida, B. (Creator), Palma, C. (Creator), Dash, S. (Creator) & Sanches Ribeiro, A. (Creator), Dryad, 11 Apr 2022
DOI: 10.5061/dryad.jsxksn0b7, https://zenodo.org/record/6450355
Dataset
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The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
Lima De Brito Almeida, B. (Creator), Mohamed Bahrudeen, M. (Creator), Chauhan, V. (Creator), Dash, S. (Creator), Kandavalli, V. (Creator), Häkkinen, A. (Creator), Lloyd-Price, J. (Creator), Santos Dias Palma, C. (Creator), Calado Baptista, I. (Creator), Gupta, A. (Creator), Kesseli, J. (Creator), Dufour, E. (Creator), Smolander, O.-P. (Creator), Nykter, M. (Creator), Auvinen, P. (Creator), Jacobs, H. (Creator), M.D. Oliveira, S. (Creator) & Sanches Ribeiro, A. (Creator), Dryad, 15 Jul 2022
Dataset
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Supplementary data for "Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements"
Oliveira, S. M. D. (Creator), Häkkinen, A. E. (Creator), Lloyd-Price, J. R. (Creator), Tran, H. (Creator), Kandavalli, V. (Creator) & Sanches Ribeiro, A. (Creator), figshare, 2016
DOI: 10.1371/journal.pcbi.1005174#sec012, https://figshare.com/articles/1/4128594
Dataset
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Production interval measurements from Transcription closed and open complex formation coordinate expression of genes with a shared promoter region
Häkkinen, A. (Creator), Oliveira, S. M. D. (Creator), Neeli-Venkata, R. (Contributor) & Sanches Ribeiro, A. (Creator), The Royal Society, 25 Nov 2019
DOI: 10.6084/m9.figshare.11108891.v1, https://doi.org/10.6084/m9.figshare.c.4757471.v1
Dataset
Prizes
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B. Almeida, V. Chauhan, A.S. Ribeiro (2018) Studying Z-ring formation following nucleoid partitioning in Escherichia coli by microscopy, flow-cytometry and machine learning. 6th Global Summit on Artificial Intelligence and Neural Networks, Oct. 15-16, Helsinki, Finland.
Sanches Ribeiro, A. (Recipient) & Lima de Brito Almeida, B. (Recipient), 2018
Prize: Award or honor granted for a specific work
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Best Paper Award at BIOTECHNO2016
Sanches Ribeiro, A. (Recipient) & Matos da Costa, S. (Recipient), 26 Jun 2016
Prize: Award or honor granted for a specific work
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C.S.D. Palma, M.N.M. Bahrudeen, V. Chauhan, I. Baptista, S. Dash, B. Almeida and A.S. Ribeiro (2020) Regulatory mechanisms of the dynamics of closely spaced promoters in E. coli. The 1st International BioDesign Research Conference (IBDRC2020), 1-18 Dec., Virtual. DOI: 10.12236/ibdrc2020-a-0045.
Sanches Ribeiro, A. (Recipient) & Santos Dias Palma, C. (Recipient), 2020
Prize: Award or honor granted for a specific work
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Honorable mention in the competition for best publication of the year of the Faculty of Medicine and Health Technology of Tampere University, 2022.
Dash, S. (Recipient), Santos Dias Palma, C. (Recipient), Calado Baptista, I. (Recipient), Lima de Brito Almeida, B. (Recipient), Mohamed Bahrudeen, M. (Recipient), Chauhan, V. (Recipient), Jagadeesan, R. (Recipient) & Sanches Ribeiro, A. (Recipient), 25 Nov 2022
Prize: Award or honor granted for a specific work
Activities
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Effects of stress on the in vivo dynamics of non-stress-responsive genes in Escherichia coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Image Aligment and Lineage Construction Tool to Study Segregation and Partitioning in Division of Unwanted Protein Aggregates in Escherchia Coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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In Vivo Retention of Protein Aggregates in Escherichia Coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Estimating the Duration of Open Complex Formation From in Vivo Measurements
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Generator of Synthetic Time-lapsed, Phase-Contrast Microscopy Images of Growing E. Coli Cell Populations
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation