Research output per year
Research output per year
Personal profile
Title of docent at TUT
Signal Processing for Systems and Molecular Biology. TUT-BMT tiedekunta. 2017 - 2017.
Signaalinkäsittely. Signaalinkäsittelyn laitos. 2012 - 2017.
Signaalinkäsittely. Signaalinkäsittelyn laitos. 2012 - 2017.
Education/Academic qualification
Doctor of Science (Technology), Universidade Tecnica de Lisboa
Award Date: 29 Jul 2004
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Dive into the research topics where Andre Sanches Ribeiro is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Analytical kinetic model of native tandem promoters in E. coli
Chauhan, V., Bahrudeen, M. N. M., Palma, C. S. D., Baptista, I. S. C., Almeida, B. L. B., Dash, S., Kandavalli, V. & Ribeiro, A. S., 31 Jan 2022, In: PLoS Computational Biology. 18, 1, 23 p., e1009824.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Downloads (Pure) -
Sequence-dependent model of genes with dual σ factor preference
Baptista, I. S. C., Kandavalli, V., Chauhan, V., Bahrudeen, M. N. M., Almeida, B. L. B., Palma, C. S. D., Dash, S. & Ribeiro, A. S., Apr 2022, In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1865, 3, 194812.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Continuous step model of expression of genes controlled by closely spaced tandem promoters
Mohamed Bahrudeen, M., Chauhan, V. & Sanches Ribeiro, A., 26 Jul 2021.Research output: Other conference contribution › Abstract › Scientific
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Surface Modification of Bioresorbable Phosphate Glasses for Controlled Protein Adsorption
Huynh, N. B., Palma, C. S. D., Rahikainen, R., Mishra, A., Azizi, L., Verne, E., Ferraris, S., Hytönen, V. P., Sanches Ribeiro, A. & Massera, J., 2021, In: ACS Biomaterials Science and Engineering. 7, 9, p. 4483−4493Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile5 Downloads (Pure) -
Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup
Palma, C. S. D., Kandavalli, V., Bahrudeen, M. N. M., Minoia, M., Chauhan, V., Dash, S. & Ribeiro, A. S., 2020, In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1863, 5, 13 p., 194515.Research output: Contribution to journal › Article › Scientific › peer-review
Datasets
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Supplementary data for "In Vivo Transcription Kinetics of a Synthetic Gene Uninvolved in Stress-Response Pathways in Stressed Escherichia coli Cells"
Muthukrishnan, A. B. (Creator), Martikainen, A. (Creator), Neeli Venkata, R. (Creator) & Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017
https://figshare.com/articles/In_Vivo_Transcription/1187355
Dataset
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Supplementary data for "Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements"
Oliveira, S. M. D. (Creator), Häkkinen, A. E. (Creator), Lloyd-Price, J. R. (Creator), Tran, H. (Creator), Kandavalli, V. (Creator) & Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2016
DOI: 10.1371/journal.pcbi.1005174#sec012, https://figshare.com/articles/1/4128594
Dataset
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Supplementary data for "In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps"
Kandhavelu, M. (Creator), Mannerström, H. O. W. (Creator), Gupta, A. (Creator), Häkkinen, A. E. (Creator), Lloyd-Price, J. R. (Creator), Yli-Harja, O. (Creator) & Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017
https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-5-149#Declarations
Dataset
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Supplementary data for "Information propagation within the Genetic Network of Saccharomyces cerevisiae"
Chowdhury, S. M. H. (Creator), Lloyd-Price, J. R. (Creator), Smolander, O. A. (Creator), Baici, W. C. V. (Creator), Hughes, T. R. (Creator), Yli-Harja, O. (Creator), Chua, G. (Creator) & Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017
https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-4-143#Declarations
Dataset
Prizes
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B. Almeida, V. Chauhan, A.S. Ribeiro (2018) Studying Z-ring formation following nucleoid partitioning in Escherichia coli by microscopy, flow-cytometry and machine learning. 6th Global Summit on Artificial Intelligence and Neural Networks, Oct. 15-16, Helsinki, Finland.
Sanches Ribeiro, Andre (Recipient) & Lima de Brito Almeida, Bilena (Recipient), 2018
Prize: Award or honor granted for a specific work
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Best Paper Award at BIOTECHNO2016
Sanches Ribeiro, Andre (Recipient) & Matos da Costa, S. (Recipient), 26 Jun 2016
Prize: Award or honor granted for a specific work
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C.S.D. Palma, M.N.M. Bahrudeen, V. Chauhan, I. Baptista, S. Dash, B. Almeida and A.S. Ribeiro (2020) Regulatory mechanisms of the dynamics of closely spaced promoters in E. coli. The 1st International BioDesign Research Conference (IBDRC2020), 1-18 Dec., Virtual. DOI: 10.12236/ibdrc2020-a-0045.
Sanches Ribeiro, Andre (Recipient) & Santos Dias Palma, Cristina (Recipient), 2020
Prize: Award or honor granted for a specific work
Activities
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Image Aligment and Lineage Construction Tool to Study Segregation and Partitioning in Division of Unwanted Protein Aggregates in Escherchia Coli
Andre Sanches Ribeiro (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Generator of Synthetic Time-lapsed, Phase-Contrast Microscopy Images of Growing E. Coli Cell Populations
Andre Sanches Ribeiro (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Analysis of the Robustness of a Single copy Repressilator
Andre Sanches Ribeiro (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Estimating the Duration of Open Complex Formation From in Vivo Measurements
Andre Sanches Ribeiro (Speaker)
2014Activity: Talk or presentation › Conference presentation
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In Vivo Retention of Protein Aggregates in Escherichia Coli
Andre Sanches Ribeiro (Speaker)
2014Activity: Talk or presentation › Conference presentation