Research output per year
Research output per year
Personal profile
Associate professor
Signal Processing for Systems and Molecular Biology. TUT-BMT tiedekunta. 2017 - 2017.
Signaalinkäsittely. Signaalinkäsittelyn laitos. 2012 - 2017.
Signaalinkäsittely. Signaalinkäsittelyn laitos. 2012 - 2017.
Education/Academic qualification
Doctor of Science (Technology), Universidade Tecnica de Lisboa
Award Date: 29 Jul 2004
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
Fingerprint
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Premature transcription termination modulates stochastic gene expression in bacteria
Moradian, S., Ali, N., Jagadeesan, R., Behrends, V., Sanches Ribeiro, A. & Engl, C., 15 May 2026, In: Science Advances. 12, 20, eaed0831.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile5 Downloads (Pure) -
Bimodality in E. coli gene expression: Sources and robustness to genome-wide stresses
Baptista, I. S. C., Dash, S., Arsh, A. M., Kandavalli, V., Scandolo, C. M., Sanders, B. C. & Ribeiro, A. S., Feb 2025, In: PLoS Computational Biology. 21, 2, 23 p., e1012817.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)17 Downloads (Pure) -
Dynamics of bacterial operons during genome-wide stresses is influenced by premature terminations and internal promoters
Jagadeesan, R., Dash, S., Palma, C. S. D., Baptista, I. S. C., Chauhan, V., Mäkelä, J. & Ribeiro, A. S., 16 May 2025, In: Science Advances. 11, 20, 16 p., eadl3570.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)26 Downloads (Pure) -
Effects of cooling on E. coli ’s DNA organization, structure, and gene expression
Arsh, A. M., Azevedo, M. M. & Ribeiro, A. S., 18 Dec 2025, In: Microbiology and Molecular Biology Reviews. 89, 4, e00153-25.Research output: Contribution to journal › Review Article › peer-review
Open AccessFile4 Downloads (Pure) -
Thermal shifts can override the effects of Transcription-targeting Antibiotics
Jagadeesan, R., Arsh, A. M., Chauhan, V., Dash, S. & Ribeiro, A. S., 16 Oct 2025, bioRxiv.Research output: Working paper › Preprint › Scientific
Open Access
Datasets
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RNA number measurements from Transcription closed and open complex formation coordinate expression of genes with a shared promoter region
Häkkinen, A. (Creator), Oliveira, S. M. D. (Creator), Neeli-Venkata, R. (Contributor) & Sanches Ribeiro, A. (Creator), figshare, 25 Nov 2019
DOI: 10.6084/m9.figshare.11108888.v1
Dataset
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Sequence-dependent model of genes with dual σ factor preference
Calado Baptista, I. (Creator), Kandavalli, V. (Creator), Chauhan, V. (Creator), Mohamed Bahrudeen, M. N. (Creator), Lima de Brito Almeida, B. (Creator), Palma, C. (Creator), Dash, S. (Creator) & Sanches Ribeiro, A. (Creator), Dryad, 11 Apr 2022
DOI: 10.5061/dryad.jsxksn0b7, https://zenodo.org/record/6450355
Dataset
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Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli
Santos Dias Palma, C. (Creator), Dash, S. (Creator), Calado Baptista, I. (Creator), Lima de Brito Almeida, B. (Creator), Bahrudeen, M. (Creator), Chauhan, V. (Creator), Jagadeesan, R. (Creator) & Sanches Ribeiro, A. (Creator), Dryad, 29 Aug 2022
DOI: 10.5061/dryad.pvmcvdnnm, https://zenodo.org/record/7056340
Dataset
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Production interval measurements from Transcription closed and open complex formation coordinate expression of genes with a shared promoter region
Häkkinen, A. (Creator), Oliveira, S. M. D. (Creator), Neeli-Venkata, R. (Contributor) & Sanches Ribeiro, A. (Creator), The Royal Society, 25 Nov 2019
DOI: 10.6084/m9.figshare.11108891.v1, https://doi.org/10.6084/m9.figshare.c.4757471.v1
Dataset
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Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup
Palma, C. (Creator), Kandavalli, V. (Creator), Bahrudeen, M. N. M. (Creator), Minoia, M. (Creator), Chauhan, V. (Creator), Dash, S. (Creator) & Sanches Ribeiro, A. (Creator), Dryad, 30 Nov 2020
Dataset
Prizes
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B. Almeida, V. Chauhan, A.S. Ribeiro (2018) Studying Z-ring formation following nucleoid partitioning in Escherichia coli by microscopy, flow-cytometry and machine learning. 6th Global Summit on Artificial Intelligence and Neural Networks, Oct. 15-16, Helsinki, Finland.
Sanches Ribeiro, A. (Recipient) & Lima de Brito Almeida, B. (Recipient), 2018
Prize: Award or honor granted for a specific work
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Best Paper Award at BIOTECHNO2016
Sanches Ribeiro, A. (Recipient) & Matos da Costa, S. (Recipient), 26 Jun 2016
Prize: Award or honor granted for a specific work
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C.S.D. Palma, M.N.M. Bahrudeen, V. Chauhan, I. Baptista, S. Dash, B. Almeida and A.S. Ribeiro (2020) Regulatory mechanisms of the dynamics of closely spaced promoters in E. coli. The 1st International BioDesign Research Conference (IBDRC2020), 1-18 Dec., Virtual. DOI: 10.12236/ibdrc2020-a-0045.
Sanches Ribeiro, A. (Recipient) & Santos Dias Palma, C. (Recipient), 2020
Prize: Award or honor granted for a specific work
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Honorable mention in the competition for best publication of the year of the Faculty of Medicine and Health Technology of Tampere University, 2022.
Dash, S. (Recipient), Santos Dias Palma, C. (Recipient), Calado Baptista, I. (Recipient), Lima de Brito Almeida, B. (Recipient), Mohamed Bahrudeen, M. (Recipient), Chauhan, V. (Recipient), Jagadeesan, R. (Recipient) & Sanches Ribeiro, A. (Recipient), 25 Nov 2022
Prize: Award or honor granted for a specific work
Activities
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Image Aligment and Lineage Construction Tool to Study Segregation and Partitioning in Division of Unwanted Protein Aggregates in Escherchia Coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Estimating the Duration of Open Complex Formation From in Vivo Measurements
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Effects of stress on the in vivo dynamics of non-stress-responsive genes in Escherichia coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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In Vivo Retention of Protein Aggregates in Escherichia Coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation
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Effects of the nucleoid's structural plasticity on the robustness of retention of unwanted protein aggregates at the cell poles in Escherichia coli
Sanches Ribeiro, A. (Speaker)
2014Activity: Talk or presentation › Conference presentation