Olli Yli-Harja

Activities

Activities per year 1988 2003 2010 2012 2014 2015 2023

• 61 Conference presentation
• 8 Reviewer of Scientific Journal
• 7 Pre-examination of dissertation or acting as opponent to doctoral students
• 4 Membership of a scientific or program committee of a conference or seminar
• 23 More
  • 4 Position of trust in an academic community
  • 2 Chair of workshop, panel, session or tutorial
  • 2 Membership of an editorial board
  • 2 Evaluation of funding applications
  • 2 Statement of assessment of docentship
  • 2 Media appearance
  • 2 Invited lecture
  • 1 Membership of an organizing committee of a conference or seminar
  • 1 Organization of a workshop, panel, session or tutorial
  • 1 Editorship of a book or a special issue of a journal
  • 1 Evaluation of activities
  • 1 Statement of assessment of professorship
  • 1 Membership of a jury
  • 1 Visit abroad

Activities per year

Search results

• Transcriptome sequencing reveals PCAT5 - new ERG-regulated non-coding transcript in prostate cancer

  Ylipää, A. (Contributor), Kivinummi, K. (Contributor), Annala, M. (Contributor), Kohvakka, A. (Contributor), Latonen, L. (Contributor), Scaravilli, M. (Contributor), Kartasalo, K. (Contributor), Leppänen, S. (Contributor), Karakurt, S. (Contributor), Seppälä, J. (Contributor), Yli-Harja, O. (Contributor), Tammela, T. (Contributor), Zhang, W. (Contributor), Visakorpi, T. (Contributor) & Nykter, M. (Contributor)

  18 Apr 2015

  Activity: Talk or presentation › Conference presentation

• Recurrent SKIL-activating rearrangements in ETS-negative prostate cancer

  Annala, M. (Contributor), Kivinummi, K. (Contributor), Tuominen, J. (Contributor), Latonen, L. (Contributor), Ylipää, A. (Contributor), Rytövuor, O. (Contributor), Kaukoniemi, K. (Contributor), Karakurt, S. (Contributor), Yli-Harja, O. (Contributor), Vessella, R. (Contributor), Tammela, T. (Contributor), Zhang, W. (Contributor), Visakorpi, T. (Contributor) & Nykter, M. (Contributor)

  20 Mar 2015

  Activity: Talk or presentation › Conference presentation

• Analysis of the Robustness of a Single copy Repressilator

  Yli-Harja, O. (Speaker)

  2014

  Activity: Talk or presentation › Conference presentation

• Decoding the Glioblastoma Multiforme mechanism by deciphering the GPR17 networks

  Yli-Harja, O. (Speaker)

  2014

  Activity: Talk or presentation › Conference presentation

• Estimating the Duration of Open Complex Formation From in Vivo Measurements

  Yli-Harja, O. (Speaker)

  2014

  Activity: Talk or presentation › Conference presentation

• Protein-protein interaction and coarse grained simulation study of Glioblastoma Multiforme reveals novel pathways of GPR17

  Yli-Harja, O. (Speaker)

  2014

  Activity: Talk or presentation › Conference presentation

• Integrative sequencing reveals alterations in untreated and castration resistant prostate cancer

  Annala, M. (Contributor), Waltering, K. (Contributor), Ylipää, A. (Contributor), Kartasalo, K. (Contributor), Tuppurainen, K. (Contributor), Latonen, L. (Contributor), Leppänen, S. (Contributor), Karakurt, S. (Contributor), Saramäki, O. (Contributor), Scaravilli, M. (Contributor), Seppälä, J. (Contributor), Rauhala, H. (Contributor), Yli-Harja, O. (Contributor), Vessella, R. (Contributor), Tammela, T. (Contributor), Zhang, W. (Contributor), Visakorpi, T. (Contributor) & Nykter, M. (Contributor)

  6 Apr 2013

  Activity: Talk or presentation › Conference presentation

• Cell Segmentation by Multi-resolution Analysis and Maximum Likelihood Estimation (MAMLE)

  Yli-Harja, O. (Speaker)

  2013

  Activity: Talk or presentation › Conference presentation

• In vivo transcription dynamics of bacterial promoters in optimal and sub-optimal temeratures

  Yli-Harja, O. (Speaker)

  2013

  Activity: Talk or presentation › Conference presentation

• Single-Molecule Dynamics of the Bidirectional Arabinose Promoter

  Yli-Harja, O. (Speaker)

  2012

  Activity: Talk or presentation › Conference presentation

• Single-Molecule Dynamics of the Bidirectional Arabinose Promoter

  Yli-Harja, O. (Speaker)

  2012

  Activity: Talk or presentation › Conference presentation

• Effect of temperature on the in vivo kinetics of transcription initiation by the tetA promoter in Escherichia coli

  Yli-Harja, O. (Speaker)

  2012

  Activity: Talk or presentation › Conference presentation

• Effects of Rate Limiting Steps in Transcription Initiation on the Behavior of Small Genetic Motifs

  Yli-Harja, O. (Speaker)

  2012

  Activity: Talk or presentation › Conference presentation

• Attractor Robustness Does Not Restrict Information Propagation in Critical Random Boolean Networks

  Yli-Harja, O. (Speaker)

  2012

  Activity: Talk or presentation › Conference presentation

• Plasticity of in vivo RNA production under the control of tetA promoter in indiviadual Escherichia coli cells

  Yli-Harja, O. (Speaker)

  2012

  Activity: Talk or presentation › Conference presentation

• Integrated Views into Cancer Regulomes Reveal Regulatory Hot Spots

  Yli-Harja, O. (Speaker)

  2011

  Activity: Talk or presentation › Conference presentation

• A New Autofocus Algorithm for Time-lapse Imaging in Confocal Microscope

  Yli-Harja, O. (Speaker)

  2011

  Activity: Talk or presentation › Conference presentation

• Detailed model of transcription and translation at the single nucleotidal level

  Yli-Harja, O. (Speaker)

  2010

  Activity: Talk or presentation › Conference presentation

• ESTOOLS database for integrative and comparative stem cell data analysis

  Yli-Harja, O. (Speaker)

  2010

  Activity: Talk or presentation › Conference presentation

• Characterizing the acticity of a gene driven by the Tet-promoter at the population and at the sigle cell level

  Yli-Harja, O. (Speaker)

  2010

  Activity: Talk or presentation › Conference presentation

• An algorithm for knockout prediction in metabolic flux redirection

  Yli-Harja, O. (Speaker)

  2010

  Activity: Talk or presentation › Conference presentation

• A framework for functional selection of biomarkers

  Yli-Harja, O. (Speaker)

  2010

  Activity: Talk or presentation › Conference presentation

• Emulation of the delayed stochastic simulation algorithm with higner order Markov chains

  Yli-Harja, O. (Speaker)

  2010

  Activity: Talk or presentation › Conference presentation

• Modeling heterogeneity of yeast cell population in bioreactor

  Yli-Harja, O. (Speaker)

  2010

  Activity: Talk or presentation › Conference presentation

• In vitro characterisation of human adipose stem cells in fetal bovine serum and allogeneic human serum

  Yli-Harja, O. (Speaker)

  2009

  Activity: Talk or presentation › Conference presentation

• Inferrring dynamic signalling networks from steady state measurements

  Yli-Harja, O. (Speaker)

  2007

  Activity: Talk or presentation › Conference presentation

• Systems biology mehodology for studying differentation of human embryonic stem cells

  Yli-Harja, O. (Speaker)

  2007

  Activity: Talk or presentation › Conference presentation

• Sequential Monte Carlo based estimation technique for stochastic Hodgkin-Huxley model

  Yli-Harja, O. (Speaker)

  2007

  Activity: Talk or presentation › Conference presentation

• Evaluation of stochastic simulation tools for neuronal signaling

  Yli-Harja, O. (Speaker)

  2007

  Activity: Talk or presentation › Conference presentation

• Systems biology mehodology for studying differentiation of human embryonic stem cells

  Yli-Harja, O. (Speaker)

  2007

  Activity: Talk or presentation › Conference presentation

• Stochastic modelling of neuronal excitability: modelling, simulation and parameter estimation

  Yli-Harja, O. (Speaker)

  2007

  Activity: Talk or presentation › Conference presentation

• Differential gene expression of cord blood-derived CD34+ and CD133+ cells

  Yli-Harja, O. (Speaker)

  2006

  Activity: Talk or presentation › Conference presentation

• Parameter estimation for neuronal signaling models: Deterministic and stochastic in silico data

  Yli-Harja, O. (Speaker)

  2006

  Activity: Talk or presentation › Conference presentation

• Statistical similarity measures for stochastic firing data

  Yli-Harja, O. (Speaker)

  2006

  Activity: Talk or presentation › Conference presentation

• Modelling single neuron behaviour using stochastic differential equations

  Yli-Harja, O. (Speaker)

  2005

  Activity: Talk or presentation › Conference presentation

• Comparison of automated parameter estimation methods for neuronal signaling networks

  Yli-Harja, O. (Speaker)

  2005

  Activity: Talk or presentation › Conference presentation

• Simulation models of signal transduction in neurons

  Yli-Harja, O. (Speaker)

  2004

  Activity: Talk or presentation › Conference presentation

• In Silico microdissection of microarray data from heterogeneous cell populations

  Yli-Harja, O. (Speaker)

  2004

  Activity: Talk or presentation › Conference presentation

• Metabolic simulation in Matlab environment

  Yli-Harja, O. (Speaker)

  2004

  Activity: Talk or presentation › Conference presentation

• Simulations of the cerebellar granule neuron excitability and calcium-protein kinase c signaling

  Yli-Harja, O. (Speaker)

  2004

  Activity: Talk or presentation › Conference presentation

• Signal processing for systems biology

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation

• Distinguishing key biological pathways by knowledge-based multidimensional scailing analysis: application to discriminate between primary cancers and their lymph node metastases

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation

• Bioinformatic methods for visualizing, analyzing and integrating genomic and transcriptomic data from cancer cells

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation

• Distinguishing primary breast cancers and their lymph node metastases by knowledge-based multidimensional scaling analysis

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation

• Distinguishing key biological pathways by knowledge-based multidimensional scaling analysis: application to discriminate between primary breast cancers and their lymph node metastases

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation

• Cell DNA content estimation by flow cytometry time series data

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation

• Simulation and modeling tool for genetic regulatory networks

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation

• Observing the cell population asynchrony in microarray time-series data by principal component analysis

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation

• Towards identifying of regulatory gene networks from expression data using KNN classifier

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation

• Detection of buds in microscopic images of budding yeast

  Yli-Harja, O. (Speaker)

  2003

  Activity: Talk or presentation › Conference presentation