Connecting cohorts of Finnish biobanks creates a research resource for the study of healthy ageing

  • Niina Eklund
  • , Salla Maaria Pätsi
  • , Heli Lehtiniemi
  • , Samppa Rohkimainen
  • , Juha Kivelä
  • , Hanna Öhman
  • , Minttu Sauramo
  • , Kyösti Sutinen
  • , Anja Keskinarkaus
  • , Perttu Terho
  • , Tapio Seppänen
  • , Pia Nyberg
  • , Minna Männikkö
  • , Kaisa Silander*
  • *Corresponding author for this work

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)
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Abstract

Aims: Connecting cohorts with biobanks is a Finnish biobank collaboration, creating an infrastructure for the study of healthy ageing. We aimed to develop a model for data integration and harmonisation between different biobanks with procedures for joint access. Methods: The heart of the collaboration is the integrated datasets formed by using data from three biobanks: (a) Arctic Biobank, hosting regional birth cohorts and cohorts of elderly; (b) hospital-affiliated Borealis Biobank of Northern Finland; and (c) THL Biobank, hosting population-based cohorts. The datasets were created by developing a data dictionary, harmonising cohort data and with a joint pseudonymisation process. Results: The connecting cohorts with biobanks resource at its widest consists altogether of almost 1.4 million individuals from collaborating biobanks. Utilising data from 107,000 cohort participants, we created harmonised datasets that contain attributes describing metabolic risk and frailty for studies of healthy ageing. These data can be complemented with medical data available from Biobank Borealis and with samples taken at hospital settings for approximately 38,000 cohort participants. In addition, the harmonised connecting cohorts with biobanks datasets can be expanded with supplementary data and samples from the collaborating biobanks. Conclusions: The connecting cohorts with biobanks datasets provide a unique resource for research on ageing-related personalised healthcare and for real-world evidence studies. Following the FAIR principles on findability, accessibility, interoperability, and reusability, the reused and harmonised datasets are findable and made accessible for researchers. The same approach can be further utilised to develop additional datasets for other research topics.

Original languageEnglish
Number of pages9
JournalScandinavian Journal of Public Health
DOIs
Publication statusE-pub ahead of print - 2024
Publication typeA1 Journal article-refereed

Funding

The author(s) disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: This work was funded by the Research Council of Finland (Academy of Finland, grant numbers 309112, 309276, and 309277).

FundersFunder number
Strategic Research Council at the Research Council of Finland309112, 309277, 309276

    UN SDGs

    This output contributes to the following UN Sustainable Development Goals (SDGs)

    1. SDG 3 - Good Health and Well-being
      SDG 3 Good Health and Well-being

    Keywords

    • Biobank
    • cohort
    • data harmonisation
    • electronic health records
    • genomics
    • healthy ageing
    • research resource

    Publication forum classification

    • Publication forum level 1

    ASJC Scopus subject areas

    • Public Health, Environmental and Occupational Health

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