Construction of a computational data analysis pipeline using a workflow system

Kaisa-Leena Aho; Erja Kerkelä; Olli Yli-Harja; Christophe Roos

Construction of a computational data analysis pipeline using a workflow system

Kaisa-Leena Aho
, Erja Kerkelä
, Olli Yli-Harja
, Christophe Roos

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

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Abstract

We present how we used a workflow system to create a computational pipeline for storing, preprocessing and statistically analyzing gene expression microarray data together with public annotation information. The pipeline demonstrates that the used workflow system can facilitate reuse and documentation of the analysis methods which are adaptable to changing integrative data analysis approaches.

Translated title of the contribution	Construction of a computational data analysis pipeline using a workflow system
Original language	English
Title of host publication	Proceedings of the Seventh International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, June 16-18, 2010. TICSP Series
Editors	Matti Nykter, Pekka Ruusuvuori, Carsten Carlberg, Olli Yli-Harja
Pages	4 p
Publication status	Published - 2010
Publication type	A4 Article in conference proceedings

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Aho construction of a computational data analysis

http://urn.fi/URN:NBN:fi:tty-201308131280

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Aho, K.-L., Kerkelä, E., Yli-Harja, O., & Roos, C. (2010). Construction of a computational data analysis pipeline using a workflow system. In M. Nykter, P. Ruusuvuori, C. Carlberg, & O. Yli-Harja (Eds.), Proceedings of the Seventh International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, June 16-18, 2010. TICSP Series (pp. 4 p) http://urn.fi/URN:NBN:fi:tty-201308131280

Aho, Kaisa-Leena ; Kerkelä, Erja ; Yli-Harja, Olli et al. / Construction of a computational data analysis pipeline using a workflow system. Proceedings of the Seventh International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, June 16-18, 2010. TICSP Series. editor / Matti Nykter ; Pekka Ruusuvuori ; Carsten Carlberg ; Olli Yli-Harja. 2010. pp. 4 p

@inproceedings{13394f1fe7aa46799ff5b32683d36f3e,

title = "Construction of a computational data analysis pipeline using a workflow system",

abstract = "We present how we used a workflow system to create a computational pipeline for storing, preprocessing and statistically analyzing gene expression microarray data together with public annotation information. The pipeline demonstrates that the used workflow system can facilitate reuse and documentation of the analysis methods which are adaptable to changing integrative data analysis approaches.",

author = "Kaisa-Leena Aho and Erja Kerkel{\"a} and Olli Yli-Harja and Christophe Roos",

note = "Contribution: organisation=sgn,FACT1=1",

year = "2010",

language = "English",

isbn = "978-952-15-2384-7",

pages = "4 p",

editor = "Matti Nykter and Pekka Ruusuvuori and Carsten Carlberg and Olli Yli-Harja",

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Aho, K-L, Kerkelä, E, Yli-Harja, O & Roos, C 2010, Construction of a computational data analysis pipeline using a workflow system. in M Nykter, P Ruusuvuori, C Carlberg & O Yli-Harja (eds), Proceedings of the Seventh International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, June 16-18, 2010. TICSP Series. pp. 4 p. <http://urn.fi/URN:NBN:fi:tty-201308131280>

Construction of a computational data analysis pipeline using a workflow system. / Aho, Kaisa-Leena; Kerkelä, Erja; Yli-Harja, Olli et al.
Proceedings of the Seventh International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, June 16-18, 2010. TICSP Series. ed. / Matti Nykter; Pekka Ruusuvuori; Carsten Carlberg; Olli Yli-Harja. 2010. p. 4 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

TY - GEN

T1 - Construction of a computational data analysis pipeline using a workflow system

AU - Aho, Kaisa-Leena

AU - Kerkelä, Erja

AU - Yli-Harja, Olli

AU - Roos, Christophe

N1 - Contribution: organisation=sgn,FACT1=1

PY - 2010

Y1 - 2010

N2 - We present how we used a workflow system to create a computational pipeline for storing, preprocessing and statistically analyzing gene expression microarray data together with public annotation information. The pipeline demonstrates that the used workflow system can facilitate reuse and documentation of the analysis methods which are adaptable to changing integrative data analysis approaches.

AB - We present how we used a workflow system to create a computational pipeline for storing, preprocessing and statistically analyzing gene expression microarray data together with public annotation information. The pipeline demonstrates that the used workflow system can facilitate reuse and documentation of the analysis methods which are adaptable to changing integrative data analysis approaches.

M3 - Conference contribution

SN - 978-952-15-2384-7

SP - 4 p

BT - Proceedings of the Seventh International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, June 16-18, 2010. TICSP Series

A2 - Nykter, Matti

A2 - Ruusuvuori, Pekka

A2 - Carlberg, Carsten

A2 - Yli-Harja, Olli

ER -

Construction of a computational data analysis pipeline using a workflow system

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