Critical assessment of automated flow cytometry data analysis techniques

N. Aghaeepour; G. Finak; D. Dougall; H. Hoos; A.H. Khodabakhshi; T.R. Mosmann; P. Mah; R. Brinkman; G. Obermoser; R. Gottardo; J. Spidlen; R.H. Scheuermann; I. Taylor; S.A. Wuensch; J. Bramson; C. Eaves; AP Weng; ES 3rd Fortuno; K Ho; TR Kollmann; W Rogers; S De Rosa; B Dalal; A Azad; A Pothen; A Brandes; H Bretschneider; R Bruggner; R Finck; R Jia; N Zimmerman; M Linderman; D Dill; G Nolan; C Chan; F El Khettabi; K O'Neill; M Chikina; Y Ge; S Sealfon; I Sugár; A Gupta; P Shooshtari; H Zare; PL De Jager; M Jiang; J Keilwagen; JM Maisog; G Luta; AA Barbo; P Májek; J Vilcek; T. Manninen; H. Huttunen; P. Ruusuvuori; M. Nykter; GJ McLachlan; K Wang; I Naim; G Sharma

doi:10.1038/nmeth.2365

Critical assessment of automated flow cytometry data analysis techniques

N. Aghaeepour, G. Finak, D. Dougall, H. Hoos, A.H. Khodabakhshi, T.R. Mosmann, P. Mah, R. Brinkman, G. Obermoser, R. Gottardo, J. Spidlen, R.H. Scheuermann, I. Taylor, S.A. Wuensch, J. Bramson, C. Eaves, AP Weng, ES 3rd Fortuno, K Ho, TR KollmannW Rogers, S De Rosa, B Dalal, A Azad, A Pothen, A Brandes, H Bretschneider, R Bruggner, R Finck, R Jia, N Zimmerman, M Linderman, D Dill, G Nolan, C Chan, F El Khettabi, K O'Neill, M Chikina, Y Ge, S Sealfon, I Sugár, A Gupta, P Shooshtari, H Zare, PL De Jager, M Jiang, J Keilwagen, JM Maisog, G Luta, AA Barbo, P Májek, J Vilcek, T. Manninen, H. Huttunen, P. Ruusuvuori, M. Nykter, GJ McLachlan, K Wang, I Naim, G Sharma

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Original language	English
Pages (from-to)	228-238
Number of pages	11
Journal	Nature Methods
Volume	10
Issue number	3
DOIs	https://doi.org/10.1038/nmeth.2365
Publication status	Published - 2013
Publication type	A1 Journal article-refereed

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Publication forum level 3

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10.1038/nmeth.2365

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Aghaeepour, N., Finak, G., Dougall, D., Hoos, H., Khodabakhshi, A. H., Mosmann, T. R., Mah, P., Brinkman, R., Obermoser, G., Gottardo, R., Spidlen, J., Scheuermann, R. H., Taylor, I., Wuensch, S. A., Bramson, J., Eaves, C., Weng, AP., Fortuno, ES. ., Ho, K., ... Sharma, G. (2013). Critical assessment of automated flow cytometry data analysis techniques. Nature Methods, 10(3), 228-238. https://doi.org/10.1038/nmeth.2365

@article{2a0e91d043604f93836c79b72dd49aeb,

title = "Critical assessment of automated flow cytometry data analysis techniques",

author = "N. Aghaeepour and G. Finak and D. Dougall and H. Hoos and A.H. Khodabakhshi and T.R. Mosmann and P. Mah and R. Brinkman and G. Obermoser and R. Gottardo and J. Spidlen and R.H. Scheuermann and I. Taylor and S.A. Wuensch and J. Bramson and C. Eaves and AP Weng and Fortuno, {ES 3rd} and K Ho and TR Kollmann and W Rogers and {De Rosa}, S and B Dalal and A Azad and A Pothen and A Brandes and H Bretschneider and R Bruggner and R Finck and R Jia and N Zimmerman and M Linderman and D Dill and G Nolan and C Chan and {El Khettabi}, F and K O'Neill and M Chikina and Y Ge and S Sealfon and I Sug{\'a}r and A Gupta and P Shooshtari and H Zare and {De Jager}, PL and M Jiang and J Keilwagen and JM Maisog and G Luta and AA Barbo and P M{\'a}jek and J Vilcek and T. Manninen and H. Huttunen and P. Ruusuvuori and M. Nykter and GJ McLachlan and K Wang and I Naim and G Sharma",

note = "Group Author(s): FlowCAP Consortium; DREAM Consortium; Corrected online 01 April 2013 In the version of this article initially published, the affiliations or names of of the following authors were not correctly communicated to the journal: Nicolas Guex, Heikki Huttunen, Tobias R.Kollman, Tapio Manninen, Matti Nykter, Pekka Ruusuvuori and Michael Seifert.The errors have been corrected in the HTML and PDF versions of the article. Contribution: organisation=sgn,FACT1=1 Portfolio EDEND: 2013-12-29 Publisher name: Nature Publishing Group",

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Aghaeepour, N, Finak, G, Dougall, D, Hoos, H, Khodabakhshi, AH, Mosmann, TR, Mah, P, Brinkman, R, Obermoser, G, Gottardo, R, Spidlen, J, Scheuermann, RH, Taylor, I, Wuensch, SA, Bramson, J, Eaves, C, Weng, AP, Fortuno, ES, Ho, K, Kollmann, TR, Rogers, W, De Rosa, S, Dalal, B, Azad, A, Pothen, A, Brandes, A, Bretschneider, H, Bruggner, R, Finck, R, Jia, R, Zimmerman, N, Linderman, M, Dill, D, Nolan, G, Chan, C, El Khettabi, F, O'Neill, K, Chikina, M, Ge, Y, Sealfon, S, Sugár, I, Gupta, A, Shooshtari, P, Zare, H, De Jager, PL, Jiang, M, Keilwagen, J, Maisog, JM, Luta, G, Barbo, AA, Májek, P, Vilcek, J, Manninen, T, Huttunen, H, Ruusuvuori, P , Nykter, M, McLachlan, GJ, Wang, K, Naim, I & Sharma, G 2013, 'Critical assessment of automated flow cytometry data analysis techniques', Nature Methods, vol. 10, no. 3, pp. 228-238. https://doi.org/10.1038/nmeth.2365

TY - JOUR

T1 - Critical assessment of automated flow cytometry data analysis techniques

AU - Aghaeepour, N.

AU - Finak, G.

AU - Dougall, D.

AU - Hoos, H.

AU - Khodabakhshi, A.H.

AU - Mosmann, T.R.

AU - Mah, P.

AU - Brinkman, R.

AU - Obermoser, G.

AU - Gottardo, R.

AU - Spidlen, J.

AU - Scheuermann, R.H.

AU - Taylor, I.

AU - Wuensch, S.A.

AU - Bramson, J.

AU - Eaves, C.

AU - Weng, AP

AU - Fortuno, ES 3rd

AU - Ho, K

AU - Kollmann, TR

AU - Rogers, W

AU - De Rosa, S

AU - Dalal, B

AU - Azad, A

AU - Pothen, A

AU - Brandes, A

AU - Bretschneider, H

AU - Bruggner, R

AU - Finck, R

AU - Jia, R

AU - Zimmerman, N

AU - Linderman, M

AU - Dill, D

AU - Nolan, G

AU - Chan, C

AU - El Khettabi, F

AU - O'Neill, K

AU - Chikina, M

AU - Ge, Y

AU - Sealfon, S

AU - Sugár, I

AU - Gupta, A

AU - Shooshtari, P

AU - Zare, H

AU - De Jager, PL

AU - Jiang, M

AU - Keilwagen, J

AU - Maisog, JM

AU - Luta, G

AU - Barbo, AA

AU - Májek, P

AU - Vilcek, J

AU - Manninen, T.

AU - Huttunen, H.

AU - Ruusuvuori, P.

AU - Nykter, M.

AU - McLachlan, GJ

AU - Wang, K

AU - Naim, I

AU - Sharma, G

N1 - Group Author(s): FlowCAP Consortium; DREAM Consortium; Corrected online 01 April 2013 In the version of this article initially published, the affiliations or names of of the following authors were not correctly communicated to the journal: Nicolas Guex, Heikki Huttunen, Tobias R.Kollman, Tapio Manninen, Matti Nykter, Pekka Ruusuvuori and Michael Seifert.The errors have been corrected in the HTML and PDF versions of the article. Contribution: organisation=sgn,FACT1=1 Portfolio EDEND: 2013-12-29 Publisher name: Nature Publishing Group

PY - 2013

Y1 - 2013

U2 - 10.1038/nmeth.2365

DO - 10.1038/nmeth.2365

M3 - Article

SN - 1548-7091

VL - 10

SP - 228

EP - 238

JO - Nature Methods

JF - Nature Methods

IS - 3

ER -