Fast hybrid Bayesian integrative learning of multiple gene regulatory networks for type 1 diabetes

Bochao Jia, Faming Liang, TEDDY Study Group

Research output: Contribution to journalArticleScientificpeer-review

Abstract

Motivated by the study of the molecular mechanism underlying type 1 diabetes with gene expression data collected from both patients and healthy controls at multiple time points, we propose a hybrid Bayesian method for jointly estimating multiple dependent Gaussian graphical models with data observed under distinct conditions, which avoids inversion of high-dimensional covariance matrices and thus can be executed very fast. We prove the consistency of the proposed method under mild conditions. The numerical results indicate the superiority of the proposed method over existing ones in both estimation accuracy and computational efficiency. Extension of the proposed method to joint estimation of multiple mixed graphical models is straightforward.

Original languageEnglish
Pages (from-to)233-249
Number of pages17
JournalBIOSTATISTICS
Volume22
Issue number2
DOIs
Publication statusPublished - Apr 2021
Externally publishedYes
Publication typeA1 Journal article-refereed

Keywords

  • Bayes Theorem
  • Diabetes Mellitus, Type 1/genetics
  • Gene Regulatory Networks
  • Humans
  • Models, Statistical
  • Normal Distribution

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