Abstract
The exocytosis is a process of fusion of secretory vesicles with plasma membrane, which plays a prominent role in many crucial cellular processes, e.g. secretion of neurotransmitters, cytokinesis or yeast budding. Prior to the SNARE-mediated fusion, the initial contact of secretory vesicle with the target membrane is mediated by an evolutionary conserved vesicle tethering protein complex, the exocyst. In all eukaryotic cells, the exocyst is composed of eight subunits - Sec5, Sec6, Sec8, Secl 0, Secl 5, Exo84 and two membrane-targeting landmark subunits Sec3 and Exo70, which have been described to directly interact with phosphatidylinositol (4,5)-bisphosphate (PIP2) of the plasma membrane. In this work, we utilized coarse-grained molecular dynamics simulations to elucidate structural details of the interaction of yeast Sec3p and Exo70p with lipid bilayers containing PIP2. We found that PIP2 is coordinated by the positively charged pocket of N-terminal part of Sec3p, which folds into unique Pleckstrin homology domain. Conversely, Exo70p interacts with the lipid bilayer by several binding sites distributed along the structure of this exocyst subunit. Moreover, we observed that the interaction of Exo70p with the membrane causes clustering of PIP2 in the adjacent leaflet. We further revealed that PIP2 is required for the correct positioning of small GTPase Rho1p, a direct Sec3p interactor, prior to the formation of the functional Rho1p-exocyst-membrane assembly. Our results show the critical importance of the plasma membrane pool of PIP2 for the exocyst function and suggest that specific interaction with acidic phospholipids represents an ancestral mechanism for the exocyst regulation. (C) 2015 Elsevier B.V. All rights reserved.
| Original language | English |
|---|---|
| Pages (from-to) | 1481-1489 |
| Number of pages | 9 |
| Journal | Biochimica et Biophysica Acta - Biomembranes |
| Volume | 1848 |
| Issue number | 7 |
| DOIs | |
| Publication status | Published - Jul 2015 |
| Publication type | A1 Journal article-refereed |
Funding
This work was supported by the Czech Grant Agency grant GACR 13-19073S to M.P. P.J. acknowledges support from the Czech Grant Agency (grant no. P208/12/G016) and via the Praemium Academiae Award. A part of V.Z. income is covered by MSMT CR project NPUI LO1417. The authors thank Dr. Lukas Synek (IEB Prague, Czech Republic) for critical reading of the manuscript. The authors express their thanks to the developers of Linux operation system and open-source programs used in preparation of this study, particularly Gimp, Gnumeric, Gromacs, Inkscape, VMD and Zotero.
Keywords
- The exocyst complex
- Exo70p
- Sec3p
- Rho1p
- Phosphatidylinositol (4,5)-bisphosphate
- Molecular dynamics simulation
- GRAINED FORCE-FIELD
- PLASMA-MEMBRANE
- SACCHAROMYCES-CEREVISIAE
- MOLECULAR SIMULATION
- SECRETORY PATHWAY
- CLUSTER FORMATION
- CRYSTAL-STRUCTURE
- SUBUNIT SEC3
- EXOCYTOSIS
- EXO70
Publication forum classification
- Publication forum level 1
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