Reorganizing the protein space at the Universal Protein Resource (UniProt)

Rolf Apweiler; Maria Jesus Martin; Claire O'Donovan; Michele Magrane; Yasmin Alam-Faruque; Ricardo Antunes; Elisabet Barrera Casanova; Benoit Bely; Mark Bingley; Lawrence Bower; Borisas Bursteinas; Wei Mun Chan; Gayatri Chavali; Alan Da Silva; Emily Dimmer; Ruth Eberhardt; Francesco Fazzini; Alexander Fedotov; John Garavelli; Leyla Garcia Castro; Michael Gardner; Reija Hieta; Rachael Huntley; Julius Jacobsen; Duncan Legge; Wudong Liu; Jie Luo; Sandra Orchard; Samuel Patient; Klemens Pichler; Diego Poggioli; Nikolas Pontikos; Sangya Pundir; Steven Rosanoff; Tony Sawford; Harminder Sehra; Edward Turner; Tony Wardell; Xavier Watkins; Matt Corbett; Mike Donnelly; Pieter Van Rensburg; Mickael Goujon; Hamish McWilliam; Rodrigo Lopez; Ioannis Xenarios; Lydie Bougueleret; Alan Bridge; Sylvain Poux; Nicole Redaschi; Ghislaine Argoud-Puy; Andrea Auchincloss; Kristian Axelsen; Delphine Baratin; Marie Claude Blatter; Brigitte Boeckmann; Jerven Bolleman; Laurent Bollondi; Emmanuel Boutet; Silvia Braconi Quintaje; Lionel Breuza; Edouard DeCastro; Lorenzo Cerutti; Elisabeth Coudert; Beatrice Cuche; Isabelle Cusin; Mikael Doche; Dolnide Dornevil; Severine Duvaud; Anne Estreicher; Livia Famiglietti; Marc Feuermann; Sebastien Gehant; Serenella Ferro; Elisabeth Gasteiger; Vivienne Gerritsen; Arnaud Gos; Nadine Gruaz-Gumowski; Ursula Hinz; Chantal Hulo; Nicolas Hulo; Janet James; Silvia Jimenez; Florence Jungo; Thomas Kappler; Guillaume Keller; Vicente Lara; Philippe Lemercier; Damien Lieberherr; Xavier Martin; Patrick Masson; Madelaine Moinat; Anne Morgat; Salvo Paesano; Ivo Pedruzzi; Sandrine Pilbout; Monica Pozzato; Manuela Pruess; Catherine Rivoire; Bernd Roechert; Michel Schneider; Christian Sigrist; Karin Sonesson; Sylvie Staehli; Eleanor Stanley; Andre Stutz; Shyamala Sundaram; Michael Tognolli; Laure Verbregue; Anne Lise Veuthey; Cathy H. Wu; Cecilia N. Arighi; Leslie Arminski; Winona C. Barker; Chuming Chen; Yongxing Chen; Pratibha Dubey; Hongzhan Huang; Abhishek Kukreja; Kati Laiho; Raja Mazumder; Peter McGarvey; Darren A. Natale; Thanemozhi G. Natarajan; Natalia V. Roberts; Baris E. Suzek; C. R. Vinayaka; Qinghua Wang; Yuqi Wang; Lai Su Yeh; Jian Zhang

doi:10.1093/nar/gkr981

Reorganizing the protein space at the Universal Protein Resource (UniProt)

Rolf Apweiler, Maria Jesus Martin, Claire O'Donovan, Michele Magrane, Yasmin Alam-Faruque, Ricardo Antunes, Elisabet Barrera Casanova, Benoit Bely, Mark Bingley, Lawrence Bower, Borisas Bursteinas, Wei Mun Chan, Gayatri Chavali, Alan Da Silva, Emily Dimmer, Ruth Eberhardt, Francesco Fazzini, Alexander Fedotov, John Garavelli, Leyla Garcia CastroMichael Gardner, Reija Hieta, Rachael Huntley, Julius Jacobsen, Duncan Legge, Wudong Liu, Jie Luo, Sandra Orchard, Samuel Patient, Klemens Pichler, Diego Poggioli, Nikolas Pontikos, Sangya Pundir, Steven Rosanoff, Tony Sawford, Harminder Sehra, Edward Turner, Tony Wardell, Xavier Watkins, Matt Corbett, Mike Donnelly, Pieter Van Rensburg, Mickael Goujon, Hamish McWilliam, Rodrigo Lopez, Ioannis Xenarios, Lydie Bougueleret, Alan Bridge, Sylvain Poux, Nicole Redaschi, Ghislaine Argoud-Puy, Andrea Auchincloss, Kristian Axelsen, Delphine Baratin, Marie Claude Blatter, Brigitte Boeckmann, Jerven Bolleman, Laurent Bollondi, Emmanuel Boutet, Silvia Braconi Quintaje, Lionel Breuza, Edouard DeCastro, Lorenzo Cerutti, Elisabeth Coudert, Beatrice Cuche, Isabelle Cusin, Mikael Doche, Dolnide Dornevil, Severine Duvaud, Anne Estreicher, Livia Famiglietti, Marc Feuermann, Sebastien Gehant, Serenella Ferro, Elisabeth Gasteiger, Vivienne Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nicolas Hulo, Janet James, Silvia Jimenez, Florence Jungo, Thomas Kappler, Guillaume Keller, Vicente Lara, Philippe Lemercier, Damien Lieberherr, Xavier Martin, Patrick Masson, Madelaine Moinat, Anne Morgat, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Monica Pozzato, Manuela Pruess, Catherine Rivoire, Bernd Roechert, Michel Schneider, Christian Sigrist, Karin Sonesson, Sylvie Staehli, Eleanor Stanley, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Anne Lise Veuthey, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Winona C. Barker, Chuming Chen, Yongxing Chen, Pratibha Dubey, Hongzhan Huang, Abhishek Kukreja, Kati Laiho, Raja Mazumder, Peter McGarvey, Darren A. Natale, Thanemozhi G. Natarajan, Natalia V. Roberts, Baris E. Suzek, C. R. Vinayaka, Qinghua Wang, Yuqi Wang, Lai Su Yeh, Jian Zhang

Research output: Contribution to journal › Article › Scientific › peer-review

1048 Citations (Scopus)

Abstract

The mission of UniProt is to support biological research by providing a freely accessible, stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and querying interfaces. UniProt is comprised of four major components, each optimized for different uses: the UniProt Archive, the UniProt Knowledgebase, the UniProt Reference Clusters and the UniProt Metagenomic and Environmental Sequence Database. A key development at UniProt is the provision of complete, reference and representative proteomes. UniProt is updated and distributed every 4 weeks and can be accessed online for searches or download at http://www.uniprot.org.

Original language	English
Journal	Nucleic Acids Research
Volume	40
Issue number	D1
DOIs	https://doi.org/10.1093/nar/gkr981
Publication status	Published - Jan 2012
Publication type	A1 Journal article-refereed

ASJC Scopus subject areas

Genetics

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10.1093/nar/gkr981

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Apweiler, R., Martin, M. J., O'Donovan, C., Magrane, M., Alam-Faruque, Y., Antunes, R., Casanova, E. B., Bely, B., Bingley, M., Bower, L., Bursteinas, B., Chan, W. M., Chavali, G., Da Silva, A., Dimmer, E., Eberhardt, R., Fazzini, F., Fedotov, A., Garavelli, J., ... Zhang, J. (2012). Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Research, 40(D1). https://doi.org/10.1093/nar/gkr981

@article{8a42366bac7f4e998ff0cc4a248a414a,

title = "Reorganizing the protein space at the Universal Protein Resource (UniProt)",

abstract = "The mission of UniProt is to support biological research by providing a freely accessible, stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and querying interfaces. UniProt is comprised of four major components, each optimized for different uses: the UniProt Archive, the UniProt Knowledgebase, the UniProt Reference Clusters and the UniProt Metagenomic and Environmental Sequence Database. A key development at UniProt is the provision of complete, reference and representative proteomes. UniProt is updated and distributed every 4 weeks and can be accessed online for searches or download at http://www.uniprot.org.",

author = "Rolf Apweiler and Martin, {Maria Jesus} and Claire O'Donovan and Michele Magrane and Yasmin Alam-Faruque and Ricardo Antunes and Casanova, {Elisabet Barrera} and Benoit Bely and Mark Bingley and Lawrence Bower and Borisas Bursteinas and Chan, {Wei Mun} and Gayatri Chavali and {Da Silva}, Alan and Emily Dimmer and Ruth Eberhardt and Francesco Fazzini and Alexander Fedotov and John Garavelli and Castro, {Leyla Garcia} and Michael Gardner and Reija Hieta and Rachael Huntley and Julius Jacobsen and Duncan Legge and Wudong Liu and Jie Luo and Sandra Orchard and Samuel Patient and Klemens Pichler and Diego Poggioli and Nikolas Pontikos and Sangya Pundir and Steven Rosanoff and Tony Sawford and Harminder Sehra and Edward Turner and Tony Wardell and Xavier Watkins and Matt Corbett and Mike Donnelly and {Van Rensburg}, Pieter and Mickael Goujon and Hamish McWilliam and Rodrigo Lopez and Ioannis Xenarios and Lydie Bougueleret and Alan Bridge and Sylvain Poux and Nicole Redaschi and Ghislaine Argoud-Puy and Andrea Auchincloss and Kristian Axelsen and Delphine Baratin and Blatter, {Marie Claude} and Brigitte Boeckmann and Jerven Bolleman and Laurent Bollondi and Emmanuel Boutet and Quintaje, {Silvia Braconi} and Lionel Breuza and Edouard DeCastro and Lorenzo Cerutti and Elisabeth Coudert and Beatrice Cuche and Isabelle Cusin and Mikael Doche and Dolnide Dornevil and Severine Duvaud and Anne Estreicher and Livia Famiglietti and Marc Feuermann and Sebastien Gehant and Serenella Ferro and Elisabeth Gasteiger and Vivienne Gerritsen and Arnaud Gos and Nadine Gruaz-Gumowski and Ursula Hinz and Chantal Hulo and Nicolas Hulo and Janet James and Silvia Jimenez and Florence Jungo and Thomas Kappler and Guillaume Keller and Vicente Lara and Philippe Lemercier and Damien Lieberherr and Xavier Martin and Patrick Masson and Madelaine Moinat and Anne Morgat and Salvo Paesano and Ivo Pedruzzi and Sandrine Pilbout and Monica Pozzato and Manuela Pruess and Catherine Rivoire and Bernd Roechert and Michel Schneider and Christian Sigrist and Karin Sonesson and Sylvie Staehli and Eleanor Stanley and Andre Stutz and Shyamala Sundaram and Michael Tognolli and Laure Verbregue and Veuthey, {Anne Lise} and Wu, {Cathy H.} and Arighi, {Cecilia N.} and Leslie Arminski and Barker, {Winona C.} and Chuming Chen and Yongxing Chen and Pratibha Dubey and Hongzhan Huang and Abhishek Kukreja and Kati Laiho and Raja Mazumder and Peter McGarvey and Natale, {Darren A.} and Natarajan, {Thanemozhi G.} and Roberts, {Natalia V.} and Suzek, {Baris E.} and Vinayaka, {C. R.} and Qinghua Wang and Yuqi Wang and Yeh, {Lai Su} and Jian Zhang",

year = "2012",

month = jan,

doi = "10.1093/nar/gkr981",

language = "English",

volume = "40",

journal = "Nucleic Acids Research",

issn = "0305-1048",

publisher = "Oxford University Press",

number = "D1",

}

Apweiler, R, Martin, MJ, O'Donovan, C, Magrane, M, Alam-Faruque, Y, Antunes, R, Casanova, EB, Bely, B, Bingley, M, Bower, L, Bursteinas, B, Chan, WM, Chavali, G, Da Silva, A, Dimmer, E, Eberhardt, R, Fazzini, F, Fedotov, A, Garavelli, J, Castro, LG, Gardner, M, Hieta, R, Huntley, R, Jacobsen, J, Legge, D, Liu, W, Luo, J, Orchard, S, Patient, S, Pichler, K, Poggioli, D, Pontikos, N, Pundir, S, Rosanoff, S, Sawford, T, Sehra, H, Turner, E, Wardell, T, Watkins, X, Corbett, M, Donnelly, M, Van Rensburg, P, Goujon, M, McWilliam, H, Lopez, R, Xenarios, I, Bougueleret, L, Bridge, A, Poux, S, Redaschi, N, Argoud-Puy, G, Auchincloss, A, Axelsen, K, Baratin, D, Blatter, MC, Boeckmann, B, Bolleman, J, Bollondi, L, Boutet, E, Quintaje, SB, Breuza, L, DeCastro, E, Cerutti, L, Coudert, E, Cuche, B, Cusin, I, Doche, M, Dornevil, D, Duvaud, S, Estreicher, A, Famiglietti, L, Feuermann, M, Gehant, S, Ferro, S, Gasteiger, E, Gerritsen, V, Gos, A, Gruaz-Gumowski, N, Hinz, U, Hulo, C, Hulo, N, James, J, Jimenez, S, Jungo, F, Kappler, T, Keller, G, Lara, V, Lemercier, P, Lieberherr, D, Martin, X, Masson, P, Moinat, M, Morgat, A, Paesano, S, Pedruzzi, I, Pilbout, S, Pozzato, M, Pruess, M, Rivoire, C, Roechert, B, Schneider, M, Sigrist, C, Sonesson, K, Staehli, S, Stanley, E, Stutz, A, Sundaram, S, Tognolli, M, Verbregue, L, Veuthey, AL, Wu, CH, Arighi, CN, Arminski, L, Barker, WC, Chen, C, Chen, Y, Dubey, P, Huang, H, Kukreja, A, Laiho, K, Mazumder, R, McGarvey, P, Natale, DA, Natarajan, TG, Roberts, NV, Suzek, BE, Vinayaka, CR, Wang, Q, Wang, Y, Yeh, LS & Zhang, J 2012, 'Reorganizing the protein space at the Universal Protein Resource (UniProt)', Nucleic Acids Research, vol. 40, no. D1. https://doi.org/10.1093/nar/gkr981

TY - JOUR

T1 - Reorganizing the protein space at the Universal Protein Resource (UniProt)

AU - Apweiler, Rolf

AU - Martin, Maria Jesus

AU - O'Donovan, Claire

AU - Magrane, Michele

AU - Alam-Faruque, Yasmin

AU - Antunes, Ricardo

AU - Casanova, Elisabet Barrera

AU - Bely, Benoit

AU - Bingley, Mark

AU - Bower, Lawrence

AU - Bursteinas, Borisas

AU - Chan, Wei Mun

AU - Chavali, Gayatri

AU - Da Silva, Alan

AU - Dimmer, Emily

AU - Eberhardt, Ruth

AU - Fazzini, Francesco

AU - Fedotov, Alexander

AU - Garavelli, John

AU - Castro, Leyla Garcia

AU - Gardner, Michael

AU - Hieta, Reija

AU - Huntley, Rachael

AU - Jacobsen, Julius

AU - Legge, Duncan

AU - Liu, Wudong

AU - Luo, Jie

AU - Orchard, Sandra

AU - Patient, Samuel

AU - Pichler, Klemens

AU - Poggioli, Diego

AU - Pontikos, Nikolas

AU - Pundir, Sangya

AU - Rosanoff, Steven

AU - Sawford, Tony

AU - Sehra, Harminder

AU - Turner, Edward

AU - Wardell, Tony

AU - Watkins, Xavier

AU - Corbett, Matt

AU - Donnelly, Mike

AU - Van Rensburg, Pieter

AU - Goujon, Mickael

AU - McWilliam, Hamish

AU - Lopez, Rodrigo

AU - Xenarios, Ioannis

AU - Bougueleret, Lydie

AU - Bridge, Alan

AU - Poux, Sylvain

AU - Redaschi, Nicole

AU - Argoud-Puy, Ghislaine

AU - Auchincloss, Andrea

AU - Axelsen, Kristian

AU - Baratin, Delphine

AU - Blatter, Marie Claude

AU - Boeckmann, Brigitte

AU - Bolleman, Jerven

AU - Bollondi, Laurent

AU - Boutet, Emmanuel

AU - Quintaje, Silvia Braconi

AU - Breuza, Lionel

AU - DeCastro, Edouard

AU - Cerutti, Lorenzo

AU - Coudert, Elisabeth

AU - Cuche, Beatrice

AU - Cusin, Isabelle

AU - Doche, Mikael

AU - Dornevil, Dolnide

AU - Duvaud, Severine

AU - Estreicher, Anne

AU - Famiglietti, Livia

AU - Feuermann, Marc

AU - Gehant, Sebastien

AU - Ferro, Serenella

AU - Gasteiger, Elisabeth

AU - Gerritsen, Vivienne

AU - Gos, Arnaud

AU - Gruaz-Gumowski, Nadine

AU - Hinz, Ursula

AU - Hulo, Chantal

AU - Hulo, Nicolas

AU - James, Janet

AU - Jimenez, Silvia

AU - Jungo, Florence

AU - Kappler, Thomas

AU - Keller, Guillaume

AU - Lara, Vicente

AU - Lemercier, Philippe

AU - Lieberherr, Damien

AU - Martin, Xavier

AU - Masson, Patrick

AU - Moinat, Madelaine

AU - Morgat, Anne

AU - Paesano, Salvo

AU - Pedruzzi, Ivo

AU - Pilbout, Sandrine

AU - Pozzato, Monica

AU - Pruess, Manuela

AU - Rivoire, Catherine

AU - Roechert, Bernd

AU - Schneider, Michel

AU - Sigrist, Christian

AU - Sonesson, Karin

AU - Staehli, Sylvie

AU - Stanley, Eleanor

AU - Stutz, Andre

AU - Sundaram, Shyamala

AU - Tognolli, Michael

AU - Verbregue, Laure

AU - Veuthey, Anne Lise

AU - Wu, Cathy H.

AU - Arighi, Cecilia N.

AU - Arminski, Leslie

AU - Barker, Winona C.

AU - Chen, Chuming

AU - Chen, Yongxing

AU - Dubey, Pratibha

AU - Huang, Hongzhan

AU - Kukreja, Abhishek

AU - Laiho, Kati

AU - Mazumder, Raja

AU - McGarvey, Peter

AU - Natale, Darren A.

AU - Natarajan, Thanemozhi G.

AU - Roberts, Natalia V.

AU - Suzek, Baris E.

AU - Vinayaka, C. R.

AU - Wang, Qinghua

AU - Wang, Yuqi

AU - Yeh, Lai Su

AU - Zhang, Jian

PY - 2012/1

Y1 - 2012/1

N2 - The mission of UniProt is to support biological research by providing a freely accessible, stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and querying interfaces. UniProt is comprised of four major components, each optimized for different uses: the UniProt Archive, the UniProt Knowledgebase, the UniProt Reference Clusters and the UniProt Metagenomic and Environmental Sequence Database. A key development at UniProt is the provision of complete, reference and representative proteomes. UniProt is updated and distributed every 4 weeks and can be accessed online for searches or download at http://www.uniprot.org.

AB - The mission of UniProt is to support biological research by providing a freely accessible, stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and querying interfaces. UniProt is comprised of four major components, each optimized for different uses: the UniProt Archive, the UniProt Knowledgebase, the UniProt Reference Clusters and the UniProt Metagenomic and Environmental Sequence Database. A key development at UniProt is the provision of complete, reference and representative proteomes. UniProt is updated and distributed every 4 weeks and can be accessed online for searches or download at http://www.uniprot.org.

UR - http://www.scopus.com/inward/record.url?scp=84860833500&partnerID=8YFLogxK

U2 - 10.1093/nar/gkr981

DO - 10.1093/nar/gkr981

M3 - Article

C2 - 22102590

AN - SCOPUS:84860833500

SN - 0305-1048

VL - 40

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - D1

ER -

Reorganizing the protein space at the Universal Protein Resource (UniProt)

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