Revised whole genome and DNA methylome of Mycobacterium marinum type strain ATCC 927T

Kirsi Savijoki; Paulina Deptula; Richard J. Roberts; Milka Hammarén; Jari Yli-Kauhaluoma; Pekka Varmanen; Mataleena Parikka

doi:10.1128/mra.01016-23

Revised whole genome and DNA methylome of Mycobacterium marinum type strain ATCC 927T

Kirsi Savijoki^*
, Paulina Deptula^*
, Richard J. Roberts
, Milka Hammarén
, Jari Yli-Kauhaluoma
, Pekka Varmanen
, Mataleena Parikka^*

^*Corresponding author for this work

Biosciences

Research output: Contribution to journal › Article › Scientific › peer-review

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Abstract

Mycobacterium marinum, a slow-growing Actinobacterium, typically induces tuberculosis-like disease in fish.Here, we report a new reference sequence for M. marinum ATCC 927T, along with its DNA methylome. This aims to maximize the research potential of this type strain and facilitates investigations into the pathomechanisms of human tuberculosis.

Original language	English
Article number	e01016-23
Journal	Microbiology Resource Announcements
Volume	13
Issue number	4
DOIs	https://doi.org/10.1128/mra.01016-23
Publication status	Published - Apr 2024
Publication type	A1 Journal article-refereed

Funding

This work was supported by H2020-MSCA-IF grant number 845658 (P.D.); Academy of Finland grant numbers 322012 and 348973 (J.Y.-K.), 325784 (P.V.), 338624 (M.H.), and 348968 (M.P.); and grants from Jane and Aatos Erkko Foundation (M.P.), Sigrid Jus\u00E9lius Foundation (M.P.), and Tampere Tuberculosis Foundation (M.P. and M.H.).

Funders	Funder number
Tampereen tuberkuloosisäätiö
Jane ja Aatos Erkon Säätiö
Sigrid Juséliuksen Säätiö
Strategic Research Council at the Research Council of Finland	348973, 338624, 322012, 348968, 325784
Strategic Research Council at the Research Council of Finland
European Union’s Horizon 2020 Research and Innovation Program H2020 MSCA	845658

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 3 Good Health and Well-being

Keywords

DNA methylome
genome analysis
Mycobacterium marinum
plasmid
SMRT-PacBio
tuberculosis

Publication forum classification

Publication forum level 0

ASJC Scopus subject areas

Molecular Biology
Immunology and Microbiology (miscellaneous)
Genetics

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10.1128/mra.01016-23Licence: CC BY

Revised-whole-genome-and-dna-methylome-of-mycobacterium-marinum-type-strain-atcc-927tFinal published version, 770 KBLicence: CC BY

https://urn.fi/URN:NBN:fi:tuni-202406207342Licence: CC BY

Cite this

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title = "Revised whole genome and DNA methylome of Mycobacterium marinum type strain ATCC 927T",

abstract = "Mycobacterium marinum, a slow-growing Actinobacterium, typically induces tuberculosis-like disease in fish.Here, we report a new reference sequence for M. marinum ATCC 927T, along with its DNA methylome. This aims to maximize the research potential of this type strain and facilitates investigations into the pathomechanisms of human tuberculosis.",

keywords = "DNA methylome, genome analysis, Mycobacterium marinum, plasmid, SMRT-PacBio, tuberculosis",

author = "Kirsi Savijoki and Paulina Deptula and Roberts, \{Richard J.\} and Milka Hammar{\'e}n and Jari Yli-Kauhaluoma and Pekka Varmanen and Mataleena Parikka",

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language = "English",

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T1 - Revised whole genome and DNA methylome of Mycobacterium marinum type strain ATCC 927T

AU - Savijoki, Kirsi

AU - Deptula, Paulina

AU - Roberts, Richard J.

AU - Hammarén, Milka

AU - Yli-Kauhaluoma, Jari

AU - Varmanen, Pekka

AU - Parikka, Mataleena

PY - 2024/4

Y1 - 2024/4

N2 - Mycobacterium marinum, a slow-growing Actinobacterium, typically induces tuberculosis-like disease in fish.Here, we report a new reference sequence for M. marinum ATCC 927T, along with its DNA methylome. This aims to maximize the research potential of this type strain and facilitates investigations into the pathomechanisms of human tuberculosis.

AB - Mycobacterium marinum, a slow-growing Actinobacterium, typically induces tuberculosis-like disease in fish.Here, we report a new reference sequence for M. marinum ATCC 927T, along with its DNA methylome. This aims to maximize the research potential of this type strain and facilitates investigations into the pathomechanisms of human tuberculosis.

KW - DNA methylome

KW - genome analysis

KW - Mycobacterium marinum

KW - plasmid

KW - SMRT-PacBio

KW - tuberculosis

U2 - 10.1128/mra.01016-23

DO - 10.1128/mra.01016-23

M3 - Article

AN - SCOPUS:85190576922

SN - 2576-098X

VL - 13

JO - Microbiology Resource Announcements

JF - Microbiology Resource Announcements

IS - 4

M1 - e01016-23

ER -

Revised whole genome and DNA methylome of Mycobacterium marinum type strain ATCC 927T

Abstract

Funding

UN SDGs

Keywords

Publication forum classification

ASJC Scopus subject areas

Access to Document

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Cite this