Self-subdiffusion in solutions of star-shaped crowders: non-monotonic effects of inter-particle interactions

  • Jaeoh Shin*
  • , Andrey G. Cherstvy
  • , Ralf Metzler
  • *Corresponding author for this work

    Research output: Contribution to journalArticleScientificpeer-review

    22 Citations (Scopus)

    Abstract

    We examine by extensive computer simulations the self-diffusion of anisotropic star-like particles in crowded two-dimensional solutions. We investigate the implications of the area coverage fraction phi of the crowders and the crowder-crowder adhesion properties on the regime of transient anomalous diffusion. We systematically compute the mean squared displacement (MSD) of the particles, their time averaged MSD, and the effective diffusion coefficient. The diffusion is ergodic in the limit of long traces, such that the mean time averaged MSD converges towards the ensemble averaged MSD, and features a small residual amplitude spread of the time averaged MSD from individual trajectories. At intermediate time scales, we quantify the anomalous diffusion in the system. Also, we show that the translational-but not rotational-diffusivity of the particles Dis a nonmonotonic function of the attraction strength between them. Both diffusion coefficients decrease as the power law D(phi) similar to (1 - phi/phi*)(2 ... 2.4) with the area fraction phi occupied by the crowders and the critical value phi*. Our results might be applicable to rationalising the experimental observations of non-Brownian diffusion for a number of standard macromolecular crowders used in vitro to mimic the cytoplasmic conditions of living cells.

    Original languageEnglish
    Article number113028
    Number of pages12
    JournalNew Journal of Physics
    Volume17
    DOIs
    Publication statusPublished - 9 Nov 2015
    Publication typeA1 Journal article-refereed

    Funding

    We acknowledge funding from the Academy of Finland (Suomen Akatemia, Finland Distinguished Professorship to RM), Deutsche Forschungsgemeinschaft (DFG Grant to AGC), and the Federal Ministry of Education and Research (BMBF Project to JS).

    Keywords

    • anomalous diffusion
    • crowded fluids
    • stochastic processes
    • SINGLE-MOLECULE TRACKING
    • HARD-SPHERE SUSPENSIONS
    • FOKKER-PLANCK EQUATION
    • ANOMALOUS DIFFUSION
    • BROWNIAN-MOTION
    • GLASS-TRANSITION
    • PHYSIOLOGICAL CONSEQUENCES
    • DENDRONIZED POLYMERS
    • PHASE-TRANSITION
    • PLASMA-MEMBRANE

    Publication forum classification

    • Publication forum level 2

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