Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients

Antonio Federico; Veera Hautanen; Nils Christian; Andreas Kremer; Angela Serra; Dario Greco

doi:10.1038/s41597-020-00696-8

Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients

Antonio Federico, Veera Hautanen, Nils Christian, Andreas Kremer, Angela Serra, Dario Greco

Tutkimustuotos: Artikkeli › Scientific › vertaisarvioitu

8 Sitaatiot (Scopus)

20 Lataukset (Pure)

Abstrakti

We present manually curated transcriptomics data of psoriasis and atopic dermatitis patients retrieved from the NCBI Gene Expression Omnibus and EBI ArrayExpress repositories. We collected 39 transcriptomics datasets, deriving from DNA microarrays and RNA-Sequencing technologies, for a total of 1677 samples. We provide quality-checked, homogenised and preprocessed gene expression matrices and their corresponding metadata tables along with the estimated surrogate variables. These data represent a ready-made valuable source of knowledge for translational researchers in the dermatology field.

Alkuperäiskieli	Englanti
Artikkeli	343
Julkaisu	Scientific Data
Vuosikerta	7
Numero	1
DOI - pysyväislinkit	https://doi.org/10.1038/s41597-020-00696-8
Tila	Julkaistu - 2020
OKM-julkaisutyyppi	A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä

Julkaisufoorumi-taso

Jufo-taso 1

Pääsy asiakirjaan

10.1038/s41597-020-00696-8Lisenssi: CC BY

manually_curated_and_2020
CC BY
Final published version, 979 KBLisenssi: CC BY

http://urn.fi/URN:NBN:fi:tuni-202011208120Lisenssi: CC BY

Preprocessed and Harmonised Transcriptomics Datasets for Psoriasis and Atopic Dermatitis
Federico, A. (Creator), Hautanen, V. (Contributor), Christian, N. (Contributor), Kremer, A. (Contributor), Serra, A. (Contributor) & Greco, D. (Contributor), Zenodo, 6 heinäk. 2020
DOI - pysyväislinkki: 10.5281/zenodo.4009497
Tietoaineisto: Dataset
Metadata record for: Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients
Federico, A. (Creator), Hautanen, V. (Contributor), Christian, N. (Contributor), Kremer, A. (Contributor), Serra, A. (Contributor) & Greco, D. (Contributor), figshare, 12 lokak. 2020
DOI - pysyväislinkki: 10.6084/m9.figshare.12967916.v1
Tietoaineisto: Dataset

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abstract = "We present manually curated transcriptomics data of psoriasis and atopic dermatitis patients retrieved from the NCBI Gene Expression Omnibus and EBI ArrayExpress repositories. We collected 39 transcriptomics datasets, deriving from DNA microarrays and RNA-Sequencing technologies, for a total of 1677 samples. We provide quality-checked, homogenised and preprocessed gene expression matrices and their corresponding metadata tables along with the estimated surrogate variables. These data represent a ready-made valuable source of knowledge for translational researchers in the dermatology field.",

author = "Antonio Federico and Veera Hautanen and Nils Christian and Andreas Kremer and Angela Serra and Dario Greco",

note = "Funding Information: This study was supported by the EU IMI2 Biomap Project (Grant agreement 821511). Publisher Copyright: {\textcopyright} 2020, The Author(s). Copyright: Copyright 2020 Elsevier B.V., All rights reserved.",

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AU - Federico, Antonio

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AU - Kremer, Andreas

AU - Serra, Angela

AU - Greco, Dario

N1 - Funding Information: This study was supported by the EU IMI2 Biomap Project (Grant agreement 821511). Publisher Copyright: © 2020, The Author(s). Copyright: Copyright 2020 Elsevier B.V., All rights reserved.

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N2 - We present manually curated transcriptomics data of psoriasis and atopic dermatitis patients retrieved from the NCBI Gene Expression Omnibus and EBI ArrayExpress repositories. We collected 39 transcriptomics datasets, deriving from DNA microarrays and RNA-Sequencing technologies, for a total of 1677 samples. We provide quality-checked, homogenised and preprocessed gene expression matrices and their corresponding metadata tables along with the estimated surrogate variables. These data represent a ready-made valuable source of knowledge for translational researchers in the dermatology field.

AB - We present manually curated transcriptomics data of psoriasis and atopic dermatitis patients retrieved from the NCBI Gene Expression Omnibus and EBI ArrayExpress repositories. We collected 39 transcriptomics datasets, deriving from DNA microarrays and RNA-Sequencing technologies, for a total of 1677 samples. We provide quality-checked, homogenised and preprocessed gene expression matrices and their corresponding metadata tables along with the estimated surrogate variables. These data represent a ready-made valuable source of knowledge for translational researchers in the dermatology field.

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DO - 10.1038/s41597-020-00696-8

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Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients

Abstrakti

Julkaisufoorumi-taso

Pääsy asiakirjaan

Sormenjälki

Tietoaineistot

Preprocessed and Harmonised Transcriptomics Datasets for Psoriasis and Atopic Dermatitis

Metadata record for: Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients

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