Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients

Antonio Federico; Veera Hautanen; Nils Christian; Andreas Kremer; Angela Serra; Dario Greco

doi:10.1038/s41597-020-00696-8

Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients

Antonio Federico
, Veera Hautanen
, Nils Christian
, Andreas Kremer
, Angela Serra
, Dario Greco^*

^*Tämän työn vastaava kirjoittaja

Tutkimustuotos: Artikkeli › Tieteellinen › vertaisarvioitu

11 Sitaatiot (Scopus)

29 Lataukset (Pure)

Abstrakti

We present manually curated transcriptomics data of psoriasis and atopic dermatitis patients retrieved from the NCBI Gene Expression Omnibus and EBI ArrayExpress repositories. We collected 39 transcriptomics datasets, deriving from DNA microarrays and RNA-Sequencing technologies, for a total of 1677 samples. We provide quality-checked, homogenised and preprocessed gene expression matrices and their corresponding metadata tables along with the estimated surrogate variables. These data represent a ready-made valuable source of knowledge for translational researchers in the dermatology field.

Alkuperäiskieli	Englanti
Artikkeli	343
Julkaisu	Scientific Data
Vuosikerta	7
Numero	1
DOI - pysyväislinkit	https://doi.org/10.1038/s41597-020-00696-8
Tila	Julkaistu - 2020
OKM-julkaisutyyppi	A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä

Rahoitus

This study was supported by the EU IMI2 Biomap Project (Grant agreement 821511).

Julkaisufoorumi-taso

Jufo-taso 1

Pääsy asiakirjaan

10.1038/s41597-020-00696-8Lisenssi: CC BY

manually_curated_and_2020
CC BY
Final published version, 979 KBLisenssi: CC BY

http://urn.fi/URN:NBN:fi:tuni-202011208120Lisenssi: CC BY

Metadata record for: Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients
Federico, A. (Creator), Hautanen, V. (Contributor), Christian, N. (Contributor), Kremer, A. (Contributor), Serra, A. (Contributor) & Greco, D. (Contributor), figshare, 12 lokak. 2020
DOI - pysyväislinkki: 10.6084/m9.figshare.12967916.v1
Tietoaineisto: Dataset
Preprocessed and Harmonised Transcriptomics Datasets for Psoriasis and Atopic Dermatitis
Federico, A. (Creator), Hautanen, V. (Contributor), Christian, N. (Contributor), Kremer, A. (Contributor), Serra, A. (Contributor) & Greco, D. (Contributor), Zenodo, 6 heinäk. 2020
DOI - pysyväislinkki: 10.5281/zenodo.4009497
Tietoaineisto: Dataset

Siteeraa tätä

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title = "Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients",

abstract = "We present manually curated transcriptomics data of psoriasis and atopic dermatitis patients retrieved from the NCBI Gene Expression Omnibus and EBI ArrayExpress repositories. We collected 39 transcriptomics datasets, deriving from DNA microarrays and RNA-Sequencing technologies, for a total of 1677 samples. We provide quality-checked, homogenised and preprocessed gene expression matrices and their corresponding metadata tables along with the estimated surrogate variables. These data represent a ready-made valuable source of knowledge for translational researchers in the dermatology field.",

author = "Antonio Federico and Veera Hautanen and Nils Christian and Andreas Kremer and Angela Serra and Dario Greco",

note = "Funding Information: This study was supported by the EU IMI2 Biomap Project (Grant agreement 821511). Publisher Copyright: {\textcopyright} 2020, The Author(s). Copyright: Copyright 2020 Elsevier B.V., All rights reserved.",

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AU - Federico, Antonio

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AU - Christian, Nils

AU - Kremer, Andreas

AU - Serra, Angela

AU - Greco, Dario

N1 - Funding Information: This study was supported by the EU IMI2 Biomap Project (Grant agreement 821511). Publisher Copyright: © 2020, The Author(s). Copyright: Copyright 2020 Elsevier B.V., All rights reserved.

PY - 2020

Y1 - 2020

N2 - We present manually curated transcriptomics data of psoriasis and atopic dermatitis patients retrieved from the NCBI Gene Expression Omnibus and EBI ArrayExpress repositories. We collected 39 transcriptomics datasets, deriving from DNA microarrays and RNA-Sequencing technologies, for a total of 1677 samples. We provide quality-checked, homogenised and preprocessed gene expression matrices and their corresponding metadata tables along with the estimated surrogate variables. These data represent a ready-made valuable source of knowledge for translational researchers in the dermatology field.

AB - We present manually curated transcriptomics data of psoriasis and atopic dermatitis patients retrieved from the NCBI Gene Expression Omnibus and EBI ArrayExpress repositories. We collected 39 transcriptomics datasets, deriving from DNA microarrays and RNA-Sequencing technologies, for a total of 1677 samples. We provide quality-checked, homogenised and preprocessed gene expression matrices and their corresponding metadata tables along with the estimated surrogate variables. These data represent a ready-made valuable source of knowledge for translational researchers in the dermatology field.

U2 - 10.1038/s41597-020-00696-8

DO - 10.1038/s41597-020-00696-8

M3 - Article

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JO - Scientific Data

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Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients

Abstrakti

Rahoitus

Julkaisufoorumi-taso

Pääsy asiakirjaan

Sormenjälki

Tietoaineistot

Metadata record for: Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients

Preprocessed and Harmonised Transcriptomics Datasets for Psoriasis and Atopic Dermatitis

Siteeraa tätä